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Load CellBender h5 matrices

Source: R/seurat_helper.R
ReadCellBender_h5.Rd

Extract sparse matrix with corrected counts from CellBender h5 output file.

Usage

ReadCellBender_h5(file_name, use.names = TRUE, unique.features = TRUE)

Arguments

file_name

Path to h5 file.

use.names

Label row names with feature names rather than ID numbers (default TRUE).

unique.features

Make feature names unique (default TRUE).

Value

sparse matrix

References

Code used in function has been modified from Seurat::Read10X_h5 function of Seurat package https://github.com/satijalab/seurat (License: GPL-3).

Examples

file_name <- system.file("extdata", "raw_feature_bc_matrix_filtered.h5", package = "scMisc")
mat <- ReadCellBender_h5(file_name)